pre-miR-27a单核苷酸多态与非吸烟女性肺癌发生的相关性

目的:探讨miR-27a(rs895819，A>G)多态与非吸烟女性肺癌发生的相关性。方法:采用病例-对照研究方法，使用PCR-RFLP技术检测90例非吸烟女性原发性肺癌患者和97例非吸烟女性体检者rs895819位点基因型分布频率。非条件Logistic统计分析不同基因型与肺癌发生的相关性，并分析该多态与烹饪油烟暴露的协同效应及与临床参数的相关性。结果:肺癌组rs895819 位点GG突变基因型和G等位基因频率明显高于对照组(P=0.047,P=0.016)。AG+GG基因型明显增加了非吸烟女性肺癌的发生风险(OR=1.82，95%CI=1.01～3.28，P=0.038)。肺癌组和对照组烹饪油烟暴露率分别为57%和42%，差异有统计学意义(P=0.035)。回归分析显示该多态位点与烹饪油烟无交互作用；与临床病理特征(病理类型，临床分期和淋巴结转移)均无相关性。结论:has-miR-27a rs895819 G等位基因增加了非吸烟女性肺癌发生的风险。     

同期多原发肺癌诊断标准更新与分子遗传学特征研究进展

由于高分辨率胸部CT和肺癌早期筛查的普及,同期多原发肺癌(或称同时性多原发肺癌,synchronous multiple primary lung cancer,sMPLC)的检出率逐步提高。sMPLC与肺癌肺内转移的鉴别诊断成为尤其重要的临床问题。借助高通量测序技术刻画sMPLC的分子遗传学特征是目前研究的热点,既能阐释sMPLC的发生发展规律,也可作为临床病理诊断标准的补充和完善。本文对sMPLC诊断标准的更新进行总结,并以克隆性分析领域为例,综述sMPLC分子遗传学特征的研究进展。     

基因组拷贝数变异测序与染色体核型分析在胎儿遗传学诊断中的比较

目的比较基因组拷贝数变异测序(CNV-seq)技术和染色体核型分析和在产前胎儿遗传学诊断中的应用价值。方法收集来我院有产前诊断指征进行羊水穿刺的259例孕妇,取材后,送检染色体核型分析和CNV-seq,比较两种方法在产前诊断中的优缺点。结果259例标本中,共诊断异常染色体核型及微缺失微重复23例,总阳性诊断率8.88%(23/259),CNV-seq结果显示,共有22例染色体拷贝数异常(12例三体+9例微缺失微重复+1例三倍体),检出率为8.49%;染色体核型分析结果显示为:17例染色体异常(12例三体+3例结构异常+1例嵌合型+1例三倍体),检出率为6.56%。此外还检出染色体多态7例。结论CNV-seq与染色体核型分析对于染色体非整倍体的检测效力一致,CNV-seq能检测染色体微缺失微重复,染色体核型分析则能诊断出三体具体核型,在怀疑性染色体异常时,建议行两者联合检测。     

Comparative neuroanatomy of ctenophores: Neural and muscular systems in Euplokamis dunlapae and related species

Ctenophora is an early-branching basal metazoan lineage, which may have evolved neurons and muscles independently from other animals. However, despite the profound diversity among ctenophores, basal neuroanatomical data are limited to representatives of two genera. Here, we describe the organization of neuromuscular systems in eight ctenophore species focusing on Euplokamis dunlapae—the representative of the lineage sister to all other ctenophores. Cydippids (Hormiphora hormiphora and Dryodora glandiformis) and lobates (Bolinopsis infundibulum and Mnemiopsis leidyi) were used as reference platforms to cover both morphological and ecological diversity within the phylum. We show that even with substantial environmental differences, the basal organization of neural systems is conserved among ctenophores. In all species, we detected two distributed neuronal subsystems: the subepithelial polygonal network and the mesogleal elements. Nevertheless, each species developed specific innovations in neural, muscular, and receptor systems. Most notable Euplokamis-specific features are the following: (a) Comb nerves with giant axons. These nerves directly coordinate the rapid escape response bypassing the central integrative structure known as the aboral sensory organ. (b) Neural processes in tentacles along the rows of “boxes” providing structural support and located under striated muscles. (c) Radial muscles that cross the mesoglea and connect the outer wall to the aboral canal. (d) Flat muscles, encircling each meridional canal. Also, we detected a structurally different rectangular neural network in the feeding lobes of Lobata (Mnemiopsis/Bolinopsis) but not in other species. The described lineage-specific innovations can be used for future single-cell atlases of ctenophores and analyses of neuronal evolution in basal metazoans.     

Genetic syndromes predisposing to paediatric brain tumours: the chicken or the egg?

Cancer in childhood is a disorder of growth and development. Up to 10% of patients diagnosed with cancer during childhood have a known underlying genetic predisposition syndrome. Affected individuals usually have multisystem involvement from the underlying syndrome and certain syndromes are associated with development of characteristic tumours with sites of predilection within the neuraxis. For the healthcare professionals involved with paediatric patients it is important to have basic knowledge of the cancer susceptibility syndromes. A holistic multidisciplinary approach is required for the overall management of the syndrome itself with specific recommendations for imaging surveillance and genetic counselling based on the pattern of inheritance and the relative risk of developing a tumour. Appropriate knowledge of these syndromes will help paediatricians manage and refer patients at risk to specialist neuro-oncology centres. A typical brain tumour diagnosis can also indicate certain underlying genetic disorders and examples of such tumours include optic pathway glioma, choroid plexus carcinoma and subependymal giant cell astrocytoma. A detailed family history can be helpful in identifying at risk patients and families as the typical clinical signs associated with the genetic condition are often not fully apparent in young children. This article focuses on well-known genetic diagnoses associated with or predisposing to childhood brain tumours. In some instances, the brain tumour diagnosis subsequently leads to the diagnosis of an underlying genetic syndrome.     

基因组时代产前诊断面临的机遇和挑战

        自20世纪70年代开始，染色体核型分析技术作为诊断胎儿染色体异常的金标准已使用多年，但该技术存在分辨率较低（5~10Mb）、培养周期长、检测通量低及有培养失败风险等局限性。随后，靶向诊断技术（FISH、QF-PCR、MLPA）的出现，大大缩短了检测时间，与染色体核型技术联合应用，可早期诊断常见的胎儿染色体异常。此外，Sanger测序作为基因变异检测的金标准，可用于明确致病的单基因疾病的产前诊断。然而，以上技术均无法实现在全基因组范围内进行快速、高分辨率地诊断胎儿致病性变异。 浏览更多请关注微信公众号及当期杂志。     

Establishment of a simple and rapid method to detect MECP2 duplications using digital polymerase chain reaction

Genomic copy number variations (CNVs) can be detected by chromosomal microarray testing. However, upon final diagnosis, other methods may be recommended for a validation method to confirm CNVs. Trio analyses or carrier detection in family members are also frequently required. Previously, fluorescence in situ hybridization and/or quantitative PCR have been used; however, these methods present limitations. The purpose of this study was to establish a simple and rapid method to detect genomic copy numbers. We utilized droplet digital PCR (dPCR) with an intercalation method. Thirteen patients, who were diagnosed with MECP2 duplications via chromosomal microarray testing, were enrolled in this study. Four of their female relatives, who were verified as carriers of MECP2 duplications, were also included. Genomic copy numbers of MECP2 and IRAK1 were analyzed in comparison with reference genes: XIST and AR on the X-chromosome, and RPP30 and RPPH1 on the autosomal chromosomes. As a result, genomic copy numbers of MECP2 were rapidly and precisely detected by the dPCR system established in this study. This method can be widely applied as a diagnostic method to confirm CNVs on other chromosomal regions.     

Next-generation sequencing through multigene panel testing for the diagnosis of hereditary epidermolysis bullosa in Chinese population

Epidermolysis bullosa (EB) is a heritable blistering disorder. We performed a next-generation sequencing-based multigene panel test and successfully predicted 100% of the EB types, including, 36 EB simplex (EBS), 13 junctional EB (JEB), 86 dystrophic EB (DEB), and 3 Kindler EB. Chinese JEB and recessive DEB (RDEB) patients have relatively mild phenotypes; for severe type separately accounts for 45.5% and 23.8%, respectively. We identified 96 novel and 49 recurrent pathogenic variants in 11 genes, although we failed to detect the second mutation in one JEB and five RDEB patients. We identified one novel p.E475K mosaic mutation in the clinically normal mother of one out of 13 EBS patients with KRT5 mutations, one recurrent p.G2034R mosaic mutation, and one novel p.G2043R mosaic mutation in the clinically normal relatives of two out of 19 dominant DEB patients. This study shows that next-generation technology could be an effective tool in diagnosing EB.     

X- 连锁迟发性脊椎骨骺发育不良一家系TRAPPC2 基因变异分析

目的分析由TRAPPC2基因变异致X连锁迟发性脊椎骨骺发育不良(SEDT-XL)的临床及基因变异特点。方法回顾分析1个SEDT-XL家系的临床资料及基因检测结果。结果先证者,9岁2个月,因生长缓慢就诊,语言、运动及智力发育正常。身高115 cm(-3SD),臂间距109 cm,上部量56 cm,下部量59 cm,体质量21 kg,招风耳,尖下颌,牙列不齐,颈短,脊柱侧弯,心肺腹未见异常。采集先证者及其父母和舅舅的外周血行全外显子测序,结果显示先证者TRAPPC2基因4号外显子区域存在1个半合子变异c.115delC,导致氨基酸改变p.Q39Sfs*3。该半合子变异来自其母亲,其舅舅存在相同的半合子变异位点。结论 TRAPPC2基因4号外显子区域c.115delC突变为该家系SEDT-XL的致病原因。